Biocview "Reactome"

Access Pathways from Multiple Databases Through BioPAX and Pathway Commons

ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events

A universal enrichment tool for interpreting omics data

Build Annotation From Online Database

Client for the Reactome Analysis Service for comparative multi-omics gene set analysis

Combining GSEA-based pathway enrichment with multi omics data integration

Computing multi-omics driven similarity scores between patient tumor samples and cell lines for personalized medicine

dgeAnalysis

Enrichment Analysis using Multiple Ontologies and False Discovery Rate

Exploration and Significant Biology on a Gene Set.

Factorial Latent Variable Modeling of Single-Cell RNA-Seq Data

Functional analysis of metabolic and transcriptomic data

Functional Enrichment analysis

Gene-set Enrichment with Regularized Regression

GRAPH Interaction from pathway Topological Environment

Integrating Multi-Omic Network Data With Summay-Level GWAS Data

Interactive Multi-Omics Cancers Data Visualization and Analysis

Interface for the Reactome Content Service

Interface for the Reactome Graph Database

MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways

Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape

MLP

Multi-Contrast Gene Set Enrichment Analysis

netboxr

Pathway fingerprinting for analysis of gene expression arrays

PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons

plot bayesian network inferred from gene expression data based on enrichment analysis results

PoTRA: Pathways of Topological Rank Analysis

Random walk with restart on multiplex and heterogeneous Networks

Reactome Pathway Analysis

R Interface with InterMine-Powered Databases

statistical analysis and visualization of functional profiles for genes and gene clusters

Statistical inference based on the Sorensen-Dice dissimilarity and the Gene Ontology (GO)