Biocview "ExperimentHub"

16S rRNA Sequencing Data from the Human Microbiome Project

Access and Analyze DNA Methylation Array Databases

Access and analyze public DNA methylation array data compilations

Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor

A Curated Microarrays Dataset of MDI-induced Differentiated Adipocytes (3T3-L1) Under Genetic and Pharmacological Perturbations

An ExperimentHub package for accessing processed RLSuite data sets

An ExperimentHub Package for data sets with an Epithelial to Mesenchymal Transition (EMT)

An ExperimentHub Package for the Molecular Signatures Database (MSigDB)

Brain Data from Allen Institute Brain Atlas

Bulk and single-cell RNA-seq data from the Tabula Muris Senis project

Cancer Dependency Map Data Package

Collection of Bulk RNA-Seq Experiments With Many Replicates

Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats

Collection of publicly available imaging mass cytometry (IMC) datasets

Collection of public MERFISH datasets

Collection of Public Single-Cell RNA-Seq Datasets

Collection of spatially resolved omics datasets

Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor format

Curated Data from The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

Curated Metagenomic Data of the Human Microbiome

Curated Prostate Cancer Data

Curation of existing tuberculosis transcriptomic studies

Data and Benchmarking Results from Korthauer and Kimes et al. (2019)

Data for epimutacions package

Data for methylclock package

Data for NxtIRF

Data for SCATE (Single-cell ATAC-seq Signal Extraction and Enhancement)

Data for the chipseqDB Workflow

Data for the EpiMix package

Data Package for Biscuiteer

Data package for phylogenetic profile analysis using PhyloProfile tool

data package for xcore

Datasets for signatureSearch package

Data supporting the SingleMoleculeFootprinting pkg

easier internal data and exemplary dataset from IMvigor210CoreBiologies package

Example Data Package for CellScore

Experimental dataset from the rat BodyMap project

Experiment Hub based microbiome datasets

ExperimentHub datasets for the nullranges package

External data sets for clustifyr

External data sets for clustifyr in ExperimentHub

HiTIMED

Illumina 450k/EPIC data on FACS and MACS umbilical blood cells

Illumina EPIC data on BeadSorted child saliva cells

Illumina EPIC data on extended immunomagnetic sorted blood populations

Index of Reference Cell Type Datasets

Integrating Multi-modal Single Cell Experiment datasets

LIANA: a LIgand-receptor ANalysis frAmework

Metabolomics data sets to demonstrate functionality of the qcrms package

Multi-sample multi-group scRNA-seq data

NestLink an R data package to guide through Engineered Peptide Barcodes for In-Depth Analyzes of Binding Protein Ensembles

Open Cancer TherApeutic Discovery (OCTAD) database

PBMC data from 10X Genomics

Pre-trained random forest models obtained using preciseTAD

Provide programmatic access to the tonsil cell atlas datasets

pwrEWAS.data: Reference data accompanying pwrEWAS

Raw ground spectra recorded on Thermo Fisher Scientific mass spectrometers

Reference data for GenomicDistributions package

R-side access to BioPlex protein-protein interaction data

SCATE: Single-cell ATAC-seq Signal Extraction and Enhancement

Single cell dataset from 10x in BUS format

Single-Cell -omics Data across Mouse Gastrulation and Early Organogenesis

Single-Cell Proteomics Data Package

Single-Cell Spatial Data

Single-cell Transcriptomics Data of the Ageing Mouse Thymus

Spatial allelic expression counts for fly cross embryo

spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data

Supporting Data for SeSAMe Package

Test datasets for the MACSr package

Test Files for Single-Cell Droplet Utilities

The ewceData package provides reference data required for ewce

Transcriptomic Breast Cancer Datasets

Transcriptomic Ovarian Cancer Datasets

Transcriptomic Pancreatic Cancer Datasets

Tuberculosis Gene Expression Data for Machine Learning

Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

Vectra Polaris and Vectra 3 multiplex single-cell imaging data

Whole genome bisulfite-sequencing data on sorted blood cell populations from BLUEPRINT

Biocview "ExperimentHub"

R Package Documentation

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