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Perform the zFPKM transform on RNA-seq FPKM data. This algorithm is based on the publication by Hart et al., 2013 (Pubmed ID 24215113). Reference recommends using zFPKM > -3 to select expressed genes. Validated with encode open/closed chromosome data. Works well for gene level data using FPKM or TPM. Does not appear to calibrate well for transcript level data.
Package details |
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Author | Ron Ammar [aut, cre], John Thompson [aut] |
Bioconductor views | FeatureExtraction GeneExpression ImmunoOncology RNASeq Software |
Maintainer | Ron Ammar <ron.ammar@bms.com> |
License | GPL-3 | file LICENSE |
Version | 1.12.0 |
URL | https://github.com/ronammar/zFPKM/ |
Package repository | View on Bioconductor |
Installation |
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