zFPKM: A suite of functions to facilitate zFPKM transformations

Perform the zFPKM transform on RNA-seq FPKM data. This algorithm is based on the publication by Hart et al., 2013 (Pubmed ID 24215113). Reference recommends using zFPKM > -3 to select expressed genes. Validated with encode open/closed chromosome data. Works well for gene level data using FPKM or TPM. Does not appear to calibrate well for transcript level data.

Package details

AuthorRon Ammar [aut, cre], John Thompson [aut]
Bioconductor views FeatureExtraction GeneExpression ImmunoOncology RNASeq Software
MaintainerRon Ammar <ron.ammar@bms.com>
LicenseGPL-3 | file LICENSE
Version1.12.0
URL https://github.com/ronammar/zFPKM/
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("zFPKM")

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zFPKM documentation built on Nov. 8, 2020, 8:06 p.m.