tximport: Import and summarize transcript-level estimates for transcript- and gene-level analysis

Imports transcript-level abundance, estimated counts and transcript lengths, and summarizes into matrices for use with downstream gene-level analysis packages. Average transcript length, weighted by sample-specific transcript abundance estimates, is provided as a matrix which can be used as an offset for different expression of gene-level counts.

Package details

AuthorMichael Love [cre,aut], Charlotte Soneson [aut], Mark Robinson [aut], Rob Patro [ctb], Andrew Parker Morgan [ctb], Ryan C. Thompson [ctb], Matt Shirley [ctb], Avi Srivastava [ctb]
Bioconductor views DataImport GeneExpression ImmunoOncology Preprocessing RNASeq Transcription Transcriptomics
MaintainerMichael Love <michaelisaiahlove@gmail.com>
LicenseGPL (>=2)
Version1.18.0
URL https://github.com/mikelove/tximport
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tximport")

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tximport documentation built on Nov. 8, 2020, 8:20 p.m.