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Imports transcript-level abundance, estimated counts and transcript lengths, and summarizes into matrices for use with downstream gene-level analysis packages. Average transcript length, weighted by sample-specific transcript abundance estimates, is provided as a matrix which can be used as an offset for different expression of gene-level counts.
Package details |
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Author | Michael Love [cre,aut], Charlotte Soneson [aut], Mark Robinson [aut], Rob Patro [ctb], Andrew Parker Morgan [ctb], Ryan C. Thompson [ctb], Matt Shirley [ctb], Avi Srivastava [ctb] |
Bioconductor views | DataImport GeneExpression ImmunoOncology Preprocessing RNASeq Transcription Transcriptomics |
Maintainer | Michael Love <michaelisaiahlove@gmail.com> |
License | GPL (>=2) |
Version | 1.18.0 |
URL | https://github.com/mikelove/tximport |
Package repository | View on Bioconductor |
Installation |
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