API for ternarynet
Ternary Network Estimation

Global functions
ArrayToHash	Source code
apply.op	Source code
attractor.2	Source code
attractor.2.detail	Source code
attractor.distance.summary	Source code
attractor.posterior.2	Source code
attractorSummary	Man page
backupStage	Man page
backupStage,ternaryFitParameters-method	Man page
backupStage<-	Man page
backupStage<-,ternaryFitParameters-method	Man page
beta0	Man page
beta0,ternaryFitParameters-method	Man page
beta0<-	Man page
beta0<-,ternaryFitParameters-method	Man page
chi0	Man page
chi0,ternaryFitParameters-method	Man page
chi0<-	Man page
chi0<-,ternaryFitParameters-method	Man page
class:ternaryFit	Man page
class:ternaryFitParameters	Man page
class:ternaryPost	Man page
condense.attractor	Source code
degreeObjMin	Man page
degreeObjMin,ternaryFit-method	Man page
degreeObjMin<-	Man page
degreeObjMin<-,ternaryFit-method	Man page
degreeObjs	Man page
degreeObjs,ternaryPost-method	Man page
degreeObjs<-	Man page
degreeObjs<-,ternaryPost-method	Man page
delta	Man page
delta,ternaryFitParameters-method	Man page
delta<-	Man page
delta<-,ternaryFitParameters-method	Man page
dim,ternaryFit-method	Man page
dim,ternaryPost-method	Man page
edgePenalty	Man page
edgePenalty,ternaryFitParameters-method	Man page
edgePenalty<-	Man page
edgePenalty<-,ternaryFitParameters-method	Man page
epsilon	Man page
epsilon,ternaryFitParameters-method	Man page
epsilon<-	Man page
epsilon<-,ternaryFitParameters-method	Man page
experimentNames	Man page
experimentNames,ternaryFit-method	Man page
experimentNames,ternaryPost-method	Man page
experimentNames<-	Man page
experimentNames<-,ternaryFit-method	Man page
experimentNames<-,ternaryPost-method	Man page
f4p	Source code
finalTemperature	Man page
finalTemperature,ternaryFit-method	Man page
finalTemperature<-	Man page
finalTemperature<-,ternaryFit-method	Man page
geneNames	Man page
geneNames,ternaryFit-method	Man page
geneNames,ternaryPost-method	Man page
geneNames<-	Man page
geneNames<-,ternaryFit-method	Man page
geneNames<-,ternaryPost-method	Man page
getObservedAttractor	Source code
graph.posterior.marginal	Source code
graphObjMin	Man page
graphObjMin,ternaryFit-method	Man page
graphObjMin<-	Man page
graphObjMin<-,ternaryFit-method	Man page
graphObjs	Man page
graphObjs,ternaryPost-method	Man page
graphObjs<-	Man page
graphObjs<-,ternaryPost-method	Man page
graphPosterior	Man page
initialize,ternaryFit-method	Man page
initialize,ternaryFitParameters-method	Man page
initialize,ternaryPost-method	Man page
inputParams	Man page
inputParams,ternaryFit-method	Man page
inputParams,ternaryPost-method	Man page
inputParams<-	Man page
inputParams<-,ternaryFit-method	Man page
inputParams<-,ternaryPost-method	Man page
m0	Man page
m0,ternaryFitParameters-method	Man page
m0<-	Man page
m0<-,ternaryFitParameters-method	Man page
maxDegree	Man page
maxDegree,ternaryFitParameters-method	Man page
maxDegree<-	Man page
maxDegree<-,ternaryFitParameters-method	Man page
maxStage	Man page
maxStage,ternaryFitParameters-method	Man page
maxStage<-	Man page
maxStage<-,ternaryFitParameters-method	Man page
maxTransition	Man page
maxTransition,ternaryFitParameters-method	Man page
maxTransition<-	Man page
maxTransition<-,ternaryFitParameters-method	Man page
minScore	Man page
minScore,ternaryFit-method	Man page
minScore<-	Man page
minScore<-,ternaryFit-method	Man page
ne	Man page
ne,ternaryFitParameters-method	Man page
ne<-	Man page
ne<-,ternaryFitParameters-method	Man page
neighborDegree	Man page
neighborDegree,ternaryFitParameters-method	Man page
neighborDegree<-	Man page
neighborDegree<-,ternaryFitParameters-method	Man page
newScore	Man page
newScore,ternaryFit-method	Man page
newScore<-	Man page
newScore<-,ternaryFit-method	Man page
pAddParent	Man page
pAddParent,ternaryFitParameters-method	Man page
pAddParent<-	Man page
pAddParent<-,ternaryFitParameters-method	Man page
pExchangeParent	Man page
pExchangeParent,ternaryFitParameters-method	Man page
pExchangeParent<-	Man page
pExchangeParent<-,ternaryFitParameters-method	Man page
pNeighborhood	Man page
pNeighborhood,ternaryFitParameters-method	Man page
pNeighborhood<-	Man page
pNeighborhood<-,ternaryFitParameters-method	Man page
perturbationObj	Man page
perturbationObj,ternaryFit-method	Man page
perturbationObj,ternaryPost-method	Man page
perturbationObj<-	Man page
perturbationObj<-,ternaryFit-method	Man page
perturbationObj<-,ternaryPost-method	Man page
perturbationType	Man page
perturbationType,ternaryFitParameters-method	Man page
perturbationType<-	Man page
perturbationType<-,ternaryFitParameters-method	Man page
plotFit	Man page Source code
plotPost	Man page Source code
plotTraces	Man page Source code
predictAttractor	Man page Source code
read.cc.app	Source code
read.cc.app.bool	Source code
read.cc.app.posterior	Source code
read.cc.app.posterior.bool	Source code
read.cc.app.table.version	Source code
rho	Man page
rho,ternaryFitParameters-method	Man page
rho<-	Man page
rho<-,ternaryFitParameters-method	Man page
score.attractor	Source code
scoreType	Man page
scoreType,ternaryFitParameters-method	Man page
scoreType<-	Man page
scoreType<-,ternaryFitParameters-method	Man page
scores	Man page
scores,ternaryPost-method	Man page
scores<-	Man page
scores<-,ternaryPost-method	Man page
show,ternaryFit-method	Man page
show,ternaryFitParameters-method	Man page
show,ternaryPost-method	Man page
simulateSteadyState	Man page Source code
stageCount	Man page
stageCount,ternaryFit-method	Man page
stageCount<-	Man page
stageCount<-,ternaryFit-method	Man page
steadyStateObj	Man page
steadyStateObj,ternaryFit-method	Man page
steadyStateObj,ternaryPost-method	Man page
steadyStateObj<-	Man page
steadyStateObj<-,ternaryFit-method	Man page
steadyStateObj<-,ternaryPost-method	Man page
summarize.attractor.1	Source code
summarize.attractor.2	Source code
summarize.attractor.bool	Source code
summarize.attractor.calc	Source code
tableObjMin	Man page
tableObjMin,ternaryFit-method	Man page
tableObjMin<-	Man page
tableObjMin<-,ternaryFit-method	Man page
tableObjs	Man page
tableObjs,ternaryPost-method	Man page
tableObjs<-	Man page
tableObjs<-,ternaryPost-method	Man page
ternaryFit	Man page Source code
ternaryFit-class	Man page
ternaryFit-methods	Man page
ternaryFitParameters	Man page Source code
ternaryFitParameters-class	Man page
ternaryFitParameters-methods	Man page
ternaryPost	Man page Source code
ternaryPost-class	Man page
ternaryPost-methods	Man page
tnetfit	Man page Source code
tnetpost	Man page Source code
traces	Man page
traces,ternaryFit-method	Man page
traces<-	Man page
traces<-,ternaryFit-method	Man page
xSeed	Man page
xSeed,ternaryFit-method	Man page
xSeed<-	Man page
xSeed<-,ternaryFit-method	Man page