Files in sitePath
Detection of site fixation in molecular evolution
NEWS
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/RcppExports.R
R/printFunctions.R
R/as.data.frame.R
R/allSitesName.R
R/fixationSites.R
R/extractTips.R
R/lineagePath.R
R/plotSingleSite.R
R/fixationPath.R
R/staticData.R
R/reexports.R
R/parallelSites.R
R/paraFixSites.R
R/groupTips.R
R/fixationIndels.R
R/SNPsites.R
R/sitePath-deprecated.R
R/plotMutSites.R
R/siteNumbering.R
R/extractSite.R
R/plotFunctions.R
R/sitesMinEntropy.R
R/addMSA.R
src/RcppExports.cpp
src/lumpyCluster.cpp
src/searchNode.cpp
src/util.cpp
src/searchTree.cpp
src/treemer.h
src/lumpyCluster.h
src/treemer.cpp
src/minEntropy.cpp
src/minEntropy.h
inst/doc/sitePath.R
inst/doc/sitePath.html
inst/doc/sitePath.Rmd
inst/extdata/WNV.newick
inst/extdata/ZIKV.newick
inst/extdata/ZIKV.fasta
build/vignette.rds
tests/testthat.R
tests/testthat/test-multiprocessing.R
tests/testthat/test-printFunctions.R
tests/testthat/test-sitesMinEntropy.R
tests/testthat/test-allSitesName.R
tests/testthat/test-lineagePath.R
tests/testthat/test-groupTips.R
tests/testthat/test-as.data.frame.R
tests/testthat/test-fixationSites.R
tests/testthat/test-paraFixSites.R
tests/testthat/test-similarityMatrix.R
tests/testthat/test-fixationPath.R
tests/testthat/test-plotSingleSite.R
tests/testthat/test-siteNumbering.R
tests/testthat/test-SNPsites.R
tests/testthat/test-plotFunctions.R
tests/testthat/test-addMSA.R
tests/testthat/test-parallelSites.R
tests/testthat/test-reexports.R
vignettes/sitePath.Rmd
data/sars2_tree.rda
data/zikv_tree_reduced.rda
data/sars2_align.rda
data/zikv_align_reduced.rda
data/zikv_align.rda
data/zikv_tree.rda
data/h3n2_tree.rda
data/h3n2_tree_reduced.rda
data/h3n2_align.rda
data/h3n2_align_reduced.rda
man/allSitesName.Rd
man/as.data.frame.Rd
man/reexports.Rd
man/lineagePath.Rd
man/sitesMinEntropy.Rd
man/zikv_align.Rd
man/sars2_tree.Rd
man/parallelSites.Rd
man/groupTips.Rd
man/fixationIndels.Rd
man/setSiteNumbering.Rd
man/paraFixSites.Rd
man/extractSite.Rd
man/zikv_tree.Rd
man/similarityMatrix.Rd
man/addMSA.Rd
man/SNPsites.Rd
man/plotMutSites.Rd
man/extractTips.Rd
man/plotFunctions.Rd
man/fixationPath.Rd
man/h3n2_tree.Rd
man/sars2_align.Rd
man/fixationSites.Rd
man/h3n2_align.Rd
man/plotSingleSite.Rd
man/sitePath-deprecated.Rd
