Man pages for seqplots
An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps
| add_local_file | Add files to local SeqPlots installation |
| deployServerInstance | Prepares the instance of SeqPlots, that can be deployed to... |
| getPlotSetArray | Process genomic signal |
| getREF | Get reference genome |
| ggHeatmapPlotWrapper | Wrapper function, plotting the heatmap |
| heatmapPlotWrapper | Wrapper function, plotting the heatmap |
| imPlot2 | Modified image.plot function from "fields" package, the grey... |
| import.narrowPeak | Import function for narrowPeak format |
| MotifSetup-class | MotifSetup Reference Class |
| num2bp | Converts numeric values to labels with base pairs units, i.e... |
| num2sci | Converts numeric values labels with metric system suffix, i.e... |
| plot | Generic plot function for SeqPlots package calsses |
| plotAverage | Create the average plot |
| plotHeatmap | Plot heatmap with optional clustering |
| plotMext | Wrapper function, plotting the average plot |
| PlotSetArray-class | PlotSetArray Reference Class |
| PlotSetList-class | PlotSetList Reference Class |
| PlotSetPair-class | PlotSetPair Reference Class |
| run | SeqPlots innitiation |
| seqplots | SeqPlots - An interactive tool for visualizing NGS signals... |
| seqplots-generic | SeqPlots generic methods |
