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R/getNormFactor.R
In sSeq: Shrinkage estimation of dispersion in Negative Binomial models for RNA-seq experiments with small sample size
Defines functions
getNormFactor
Documented in
getNormFactor
getNormFactor <- function(
countsTable1
){
countsTable1.log=log(countsTable1)
row.mean1.log=rowMeans(countsTable1.log)
geo.dev1.log=countsTable1.log-row.mean1.log
apply(geo.dev1.log, 2, function(x){ exp( median(x[is.finite(x)]) ) })
}
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sSeq documentation built on Nov. 8, 2020, 5:52 p.m.
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Defines functions getNormFactor
Documented in getNormFactor
getNormFactor <- function(
countsTable1
){
countsTable1.log=log(countsTable1)
row.mean1.log=rowMeans(countsTable1.log)
geo.dev1.log=countsTable1.log-row.mean1.log
apply(geo.dev1.log, 2, function(x){ exp( median(x[is.finite(x)]) ) })
}
Try the sSeq package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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