recountmethylation: Access and Analyze DNA Methylation Array Databases

Access cross-study compilations of DNA methylation array databases. Database files can be downloaded and accessed using provided functions. Background about database file types (HDF5 and HDF5-SummarizedExperiment), SummarizedExperiment classes, and examples for data handling, validation, and analyses, can be found in the package vignettes. Note the disclaimer on package load, and consult the main manuscript for further info.

README.md Data Analyses Data Analyses recountmethylation User's Guide

Vignettes Man pages API and functions Files

Package details
Author	Sean K Maden [cre, aut] (<https://orcid.org/0000-0002-2212-4894>), Reid F Thompson [aut] (<https://orcid.org/0000-0003-3661-5296>), Kasper D Hansen [aut] (<https://orcid.org/0000-0002-3303-4819>), Abhinav Nellore [aut] (<https://orcid.org/0000-0001-8145-1484>)
Bioconductor views	DNAMethylation Epigenetics ExperimentHub MethylationArray Microarray
Maintainer	Sean K Maden <maden@ohsu.edu>
License	Artistic-2.0
Version	1.0.0
URL	https://github.com/metamaden/recountmethylation
Package repository	View on Bioconductor
Installation	Install the latest version of this package by entering the following in R: `if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("recountmethylation")`