API for proFIA
Preprocessing of FIA-HRMS data
| Global functions | |
|---|---|
| .onAttach | Source code |
| AntiSymTriangle | Source code |
| BWF | Source code |
| EstimatesComputation | Source code |
| NewtonRaphsonLike | Source code |
| OverlapSplit | Source code |
| acquisitionDirectory | Man page Source code |
| analyzeAcquisitionFIA | Man page Source code |
| binaryClosest | Source code |
| calcAngle | Source code |
| calcPvalue | Source code |
| checkIso | Source code |
| checkIsoValues | Source code |
| colorKeys | Source code |
| convolveNormalized | Source code |
| cuttingPoint | Source code |
| dataMatrix | Man page |
| dataMatrix,proFIAset-method | Man page |
| determiningInjectionZone | Man page Source code |
| determiningInjectionZoneFromTIC | Source code |
| determiningSizePeak | Man page |
| determiningSizePeak.Geom | Man page Source code |
| estimateNoiseFile | Source code |
| estimateNoiseMS | Man page Source code |
| exportDataMatrix | Man page |
| exportDataMatrix,proFIAset-method | Man page |
| exportExpressionSet | Man page |
| exportExpressionSet,proFIAset-method | Man page |
| exportPeakTable | Man page |
| exportPeakTable,proFIAset-method | Man page |
| exportSampleMetadata | Man page |
| exportSampleMetadata,proFIAset-method | Man page |
| exportVariableMetadata | Man page |
| exportVariableMetadata,proFIAset-method | Man page |
| extendSize | Source code |
| fastMatchPpm | Source code |
| findBandsFIA | Man page Source code |
| findEqualGreaterM | Source code |
| findFIASignal | Man page Source code |
| findLimDensity | Source code |
| findLinesAboveNoise | Source code |
| findMzGroup | Man page |
| findMzGroup,proFIAset-method | Man page |
| findPeaks | Man page |
| findPeaksLimits | Source code |
| fpeaks | Source code |
| fuseRange | Source code |
| getInjectionPeak | Man page Source code |
| getMidBins | Source code |
| getRawName | Source code |
| getUniqueIds | Source code |
| group.FIA | Man page |
| group.FIA,proFIAset-method | Man page |
| groupMatrix | Man page |
| groupMatrix,proFIAset-method | Man page |
| impute.FIA | Man page |
| impute.FIA,proFIAset-method | Man page |
| impute.KNN_TN | Man page |
| impute.KNN_TN,proFIAset-method | Man page |
| impute.randomForest | Man page |
| impute.randomForest,proFIAset-method | Man page |
| injectionPeaks | Man page |
| injectionPeaks,proFIAset-method | Man page |
| interToRegress | Source code |
| keysVariableMetadata | Source code |
| layoutMatrix | Source code |
| linearInterpolation | Source code |
| makeBins | Source code |
| makeDataMatrix | Man page |
| makeDataMatrix,proFIAset-method | Man page |
| makeSeparateColors | Source code |
| makeSpaces | Source code |
| matResiduals | Source code |
| matResidualsLikehood | Source code |
| matrix_effect | Source code |
| medianFiltering | Source code |
| mklhood | Source code |
| noiseEstimation-class | Man page |
| openAndFindPeaks | Source code |
| peaks | Man page |
| peaks,proFIAset-method | Man page |
| peaksGroup | Man page |
| peaksGroup,proFIAset-method | Man page |
| persoConv | Source code |
| phenoClasses | Man page |
| phenoClasses,proFIAset-method | Man page |
| plot,proFIAset,ANY,ANY-method | Man page |
| plot,proFIAset,ANY-method | Man page |
| plot,proFIAset-method | Man page |
| plot.FIA | Man page |
| plotFlowgrams | Man page |
| plotFlowgrams,proFIAset-method | Man page |
| plotNoise | Man page Source code |
| plotRaw | Man page |
| plotRaw,proFIAset-method | Man page |
| plotSamplePeaks | Man page |
| plotSamplePeaks,proFIAset-method | Man page |
| plotVoidRaw | Source code |
| proFIA | Man page |
| proFIA-package | Man page |
| proFIAset | Man page Source code |
| proFIAset-class | Man page |
| putZero | Source code |
| segmentCurve | Source code |
| smooth.BWF | Source code |
| smooth.SavGol | Source code |
| start_param_emg | Source code |
| switchSummaryPeak | Source code |
| toVoid | Source code |
| triangleDistribution | Source code |
