tests/testthat/testcreateES.R

In phantasus: Visual and interactive gene expression analysis

context("Create ExpressionSet")
library(Biobase)

test_that("createES finishes with result", {
  load(file = system.file("testdata/GSE27112-GPL6103.rda", package="phantasus"))
  expect_is(createES(data = exprs(es), pData = pData(es),
                     fData = fData(es),
                     eData = list(name="", lab="", contact="", title="", url="", other=list(), pubMedIds=""),
                     varLabels = varLabels(es),
                     fvarLabels = fvarLabels(es)), "ExpressionSet")
})