Files in metaseqR2

An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms

README.md R/external.R R/deseq.R R/argcheck.R R/noiseq.R R/metaseqr2-data.R R/util.R R/main.R R/export.R R/stat.R R/count.R R/json.R R/plot.R R/zzz.R R/filter.R R/norm.R R/meta.R R/query.R R/reportdb.R R/sim.R R/tracks.R R/metaseqR2-package.R R/annotation.R vignettes/metaseqr2-annotation.Rmd vignettes/metaseqr2-statistics.Rmd man/estimateSimParams.Rd man/importCustomAnnotation.Rd man/combineSimes.Rd man/diagplotVenn.Rd man/combineMinp.Rd man/estimateAufcWeights.Rd man/normalizeEdger.Rd man/statNoiseq.Rd man/statLimma.Rd man/diagplotRoc.Rd man/normalizeAbsseq.Rd man/diagplotVolcano.Rd man/normalizeDeseq.Rd man/statEdger.Rd man/getAnnotation.Rd man/sampleListMm9.Rd man/read2count.Rd man/diagplotDeHeatmap.Rd man/normalizeNoiseq.Rd man/statAbsseq.Rd man/metaseqrPlot.Rd man/statDss.Rd man/normalizeEdaseq.Rd man/loadAnnotation.Rd man/combineBonferroni.Rd man/diagplotAvgFtd.Rd man/makeSimDataTcc.Rd man/combineMaxp.Rd man/diagplotFiltered.Rd man/combineHarmonic.Rd man/getDefaults.Rd man/combineWeight.Rd man/normalizeNbpseq.Rd man/makeSimDataSd.Rd man/buildAnnotationDatabase.Rd man/statBayseq.Rd man/diagplotMds.Rd man/metaseqr2.Rd man/buildCustomAnnotation.Rd man/statNbpseq.Rd man/hg19pvalues.Rd man/diagplotBoxplot.Rd man/getInstalledAnnotations.Rd man/statDeseq2.Rd man/mm9GeneCounts.Rd man/normalizeDss.Rd man/createSignalTracks.Rd man/readTargets.Rd man/getWeights.Rd man/metaTest.Rd man/libsizeListMm9.Rd man/downsampleCounts.Rd man/diagplotNoiseq.Rd man/diagplotPairs.Rd man/diagplotCor.Rd man/statDeseq.Rd man/normalizeDeseq2.Rd man/diagplotEdaseq.Rd man/diagplotFtd.Rd tests/runTests.R inst/metaseqr2_report.Rmd inst/doc/metaseqr2-annotation.Rmd inst/doc/metaseqr2-statistics.Rmd inst/doc/metaseqr2-statistics.R inst/doc/metaseqr2-annotation.R inst/unitTests/test_estimate_aufc_weights.R inst/unitTests/test_metaseqr.R