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mCSEA: Methylated CpGs Set Enrichment Analysis

Identification of diferentially methylated regions (DMRs) in predefined regions (promoters, CpG islands...) from the human genome using Illumina's 450K or EPIC microarray data. Provides methods to rank CpG probes based on linear models and includes plotting functions.

Package overview Predefined DMRs identification with mCSEA package DMRs identification with mCSEA package

Vignettes Man pages API and functions Files

Package details
Author	Jordi Martorell-Marugán and Pedro Carmona-Sáez
Bioconductor views	DNAMethylation DifferentialMethylation Epigenetics Genetics GenomeAnnotation ImmunoOncology MethylationArray Microarray MultipleComparison TwoChannel
Maintainer	Jordi Martorell-Marugán <jmartorellm@gmail.com>
License	GPL-2
Version	1.10.0
Package repository	View on Bioconductor
Installation	Install the latest version of this package by entering the following in R: `if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("mCSEA")`