R/HiCR2.R

In hicrep: Measuring the reproducibility of Hi-C data

#' @title HiCR2
#' @description A Hi-C matrix in the format of \eqn{N*(3+N)}, 
#' the additional first three columns contains the chromosome
#' information and coordinates of interaction bins. First is 
#' chromosome name, the second and third are the mid-points of
#' the contacting bins.
#' @references  HiCRep: assessing the reproducibility of Hi-C 
#' data using a stratum-adjusted correlation coefficient. 
#' Tao Yang, Feipeng Zhang, Galip Gurkan Yardimci, Ross C Hardison,
#' William Stafford Noble, Feng Yue, Qunhua Li. 
#' bioRxiv 101386; doi: https://doi.org/10.1101/101386.
#'
"HiCR2"