R/HiCR1.R

In hicrep: Measuring the reproducibility of Hi-C data

#' @title HiCR1
#' @description A Hi-C matrix in the format of \eqn{N*(3+N)}, the additional 
#' first three columns contains the chromosome information and coordinates 
#' of interaction bins. First is chromosome name, the second and third 
#' are the mid-points of the contacting bins.
#' @references  HiCRep: assessing the reproducibility of Hi-C data using a 
#' stratum-adjusted correlation coefficient. Tao Yang, Feipeng Zhang, Galip 
#' Gurkan Yardimci, 
#' Ross C Hardison, William Stafford Noble, Feng Yue, Qunhua Li. 
#' bioRxiv 101386; doi: https://doi.org/10.1101/101386.
#'
"HiCR1"