API for goProfiles
goProfiles: an R package for the statistical analysis of functional profiles
| Global functions | |
|---|---|
| BioCpack2EntrezIDS | Man page |
| BioCpack2Profiles | Man page |
| BioCprobes2Entrez | Man page |
| CD4GOTermsFrame | Man page |
| CD4GOTermsList | Man page |
| CD4LLids | Man page |
| GOTermsFrame2GOTermsList | Man page |
| GOTermsList | Man page |
| `as.ExpandedGOProfile.ExpandedGOProfile` | Source code |
| `as.ExpandedGOProfile.default` | Source code |
| `as.ExpandedGOProfile` | Source code |
| `as.GOTerms.frame` | Source code |
| `belongs.to` | Source code |
| `chiPnP0Correct` | Source code |
| `completeMat` | Source code |
| `completeNames` | Source code |
| `contrMatrix` | Source code |
| `contractCol` | Source code |
| `contrast` | Source code |
| `covGO.ExpandedGOProfile` | Source code |
| `covGO.default` | Source code |
| `covGO` | Source code |
| `coverage` | Source code |
| `dgetGO` | Source code |
| `estimProbPrecision` | Source code |
| `expandCol` | Source code |
| `expandNames` | Source code |
| `expandRndGO` | Source code |
| `expandedProfile` | Source code |
| `fitGOProfile` | Source code |
| `frelGO` | Source code |
| `fullGOProfile` | Source code |
| `fullSetOfNames` | Source code |
| `generate.multinomial` | Source code |
| `geometricProfile` | Source code |
| `has.element` | Source code |
| `has.ngenes.attr` | Source code |
| `has.numGenes.attr` | Source code |
| `idEuclid2P0` | Source code |
| `idEuclid2` | Source code |
| `internal.covGO` | Source code |
| `internal.fitGOProf` | Source code |
| `internal.varDifStatPP0` | Source code |
| `internal.varDifStatPnQm` | Source code |
| `ipvalueP1Q1PQLinCombChisq` | Source code |
| `ipvaluePQLinCombChisq` | Source code |
| `ipvaluePnP0LinCombChisq` | Source code |
| `ipvaluePnPmLinCombChisq` | Source code |
| `lcombChisqParsOK` | Source code |
| `lenGO` | Source code |
| `meanICLength` | Source code |
| `mergeProfiles` | Source code |
| `multinomial` | Source code |
| `ngenes.BasicGOProfile` | Source code |
| `ngenes.ExpandedGOProfile` | Source code |
| `ngenes.default` | Source code |
| `ngenes.i` | Source code |
| `ngenes.matrix` | Source code |
| `ngenes.numeric` | Source code |
| `ngenes` | Source code |
| `niceProfile` | Source code |
| `normIntLength` | Source code |
| `plcombChisq` | Source code |
| `plot1Prof` | Source code |
| `plot2Prof` | Source code |
| `plotProfiles` | Source code |
| `plotTwo` | Source code |
| `printProfiles` | Source code |
| `pvalueExcludingLinCombChisq` | Source code |
| `pvalueIntersectLinCombChisq` | Source code |
| `pvaluePnP0LinCombChisq` | Source code |
| `pvalueRestrictLinCombChisq` | Source code |
| `qlcombChisq` | Source code |
| `reset.generation.multinomial` | Source code |
| `rlcombChisq` | Source code |
| `rndExpandedGOProfile` | Source code |
| `rndGO` | Source code |
| `seDifStatPP0` | Source code |
| `seDifStatPnQm` | Source code |
| `secondOrderMarginals` | Source code |
| `setN.multinomial` | Source code |
| `sigma.excluding` | Source code |
| `sigma.intersect` | Source code |
| `sigma.restrict` | Source code |
| `sum.and` | Source code |
| `sum.if` | Source code |
| `toNumVec` | Source code |
| `varDifStatPP0.ExpandedGOProfile` | Source code |
| `varDifStatPP0.default` | Source code |
| `varDifStatPP0` | Source code |
| `varDifStatPnQm` | Source code |
| all.wholenumber | Source code |
| allEquivTests | Source code |
| allIntersections | Source code |
| as.GOTerms.frame | Man page |
| as.GOTerms.list | Man page |
| auxIter | Source code |
| auxPdf | Source code |
| basicProfile | Man page |
| chiDisjoint | Source code |
| chiIntersect | Source code |
| chiRestrict | Source code |
| clustKidneyMF2 | Man page |
| compSummary | Man page |
| compareGOProfiles | Man page Source code |
| compareGeneLists | Man page |
| compareProfilesLists | Man page |
| contractVector | Source code |
| contractedProfile | Man page Source code |
| contractedProfile.ExpandedGOProfile | Man page Source code |
| contractedProfile.default | Man page Source code |
| dEuclid2 | Source code |
| dEuclid2.BasicGOProfile | Source code |
| dEuclid2.default | Source code |
| dimsGO | Source code |
| dimsGO.ExpandedGOProfile | Source code |
| dimsGO.character | Source code |
| diseaseIds | Man page |
| dominantIds | Man page |
| dominantIdsEBI | Man page |
| dominantIdsNCBI | Man page |
| drosophilaIds | Man page |
| equivClust | Man page Source code |
| equivClust2pdf | Man page Source code |
| equivClust2pdf.equivClust | Man page Source code |
| equivClust2pdf.iterEquivClust | Man page Source code |
| equivSummary | Man page |
| equivalentGOProfiles | Man page Source code |
| equivalentGOProfiles.ExpandedGOProfile | Man page Source code |
| equivalentGOProfiles.GOProfileHtest | Man page Source code |
| equivalentGOProfiles.default | Man page Source code |
| expandTerm | Man page |
| expandedLevel | Man page |
| expandedProfile | Man page |
| fisherGOProfiles | Man page Source code |
| fisherGOProfiles.BasicGOProfile | Man page Source code |
| fisherGOProfiles.ExpandedGOProfile | Man page Source code |
| fisherGOProfiles.matrix | Man page Source code |
| fisherGOProfiles.numeric | Man page Source code |
| fitGOProfile | Man page |
| getAncestorsLst | Man page |
| getGOLevel | Man page |
| getStats | Source code |
| goProfiles | Man page |
| goProfiles-package | Man page |
| hugoIds | Man page |
| icolContract | Source code |
| internal.compareGOProf | Source code |
| internal.enrich | Source code |
| internal.enrichProfile | Source code |
| internal.equivalentGOProf | Source code |
| intersectOne.vs.other | Source code |
| intersectOne.vs.remaining | Source code |
| is.wholenumber | Source code |
| iterEquivClust | Man page Source code |
| kidneyGeneLists | Man page |
| marginalProfile | Source code |
| mergeProfilesLists | Man page |
| michaudIds | Man page |
| morbidmapIds | Man page |
| nextEquivDist | Source code |
| ngenes | Man page |
| ngenes.BasicGOProfile | Man page |
| ngenes.ExpandedGOProfile | Man page |
| ngenes.default | Man page |
| ngenes.matrix | Man page |
| ngenes.numeric | Man page |
| omimIds | Man page |
| one.vs.other | Source code |
| one.vs.remaining | Source code |
| ostrinIds | Man page |
| plotProfiles | Man page |
| printProfiles | Man page |
| prostateIds | Man page |
| recessiveIds | Man page |
| recessiveIdsEBI | Man page |
| recessiveIdsNCBI | Man page |
| singh01EntrezIDs | Man page |
| singh05EntrezIDs | Man page |
| table2xs | Source code |
| table2xs.BasicGOProfile | Source code |
| welsh01EntrezIDs | Man page |
| welsh05EntrezIDs | Man page |
