R/genomicState-data.R

In derfinder: Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach

#' Genomic State for Hsapiens.UCSC.hg19.knownGene
#'
#' Pre-computed genomic state for Hsapiens UCSC hg19 knownGene annotation built
#' using [makeGenomicState][derfinder::makeGenomicState] for
#' TxDb.Hsapiens.UCSC.hg19.knownGene version 2.14.0. The object has been subset
#' for chr21 only.
#'
#'
#' @name genomicState
#' @docType data
#' @format  A GRangesList with two components.
#' \describe{
#' \item{fullGenome }{ classifies each region as either being exon, intron or
#' intergenic.}
#' \item{codingGenome }{ classfies the regions as being promoter, exon, intro,
#' 5UTR, 3UTR or intergenic.}
#' }
#' @keywords datasets
#' @seealso [makeGenomicState][derfinder::makeGenomicState]
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