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Tool for analysis of codon usage in various unannotated or KEGG/COG annotated DNA sequences. Calculates different measures of CU bias and CU-based predictors of gene expressivity, and performs gene set enrichment analysis for annotated sequences. Implements several methods for visualization of CU and enrichment analysis results.
Package details |
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Author | Anamaria Elek [cre, aut], Maja Kuzman [aut], Kristian Vlahovicek [aut] |
Bioconductor views | BiomedicalInformatics GeneExpression GenePrediction GeneSetEnrichment Genetics CellBiology ImmunoOncology KEGG Metagenomics Pathways Software Visualization |
Maintainer | Anamaria Elek <anamariaelek@gmail.com> |
License | Artistic-2.0 |
Version | 1.8.0 |
URL | https://github.com/BioinfoHR/coRdon |
Package repository | View on Bioconductor |
Installation |
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