R/data.R

In cmapR: CMap Tools in R

# descriptions of cmapR datasets

#' An example collection of gene sets
#' as used in the Lamb 2006 CMap paper.
#' @source Lamb et al 2006 doi:10.1126/science.1132939
"gene_set"

#' An example table of metadata, as would be
#' parsed from or parse.gctx. Initially all the
#' columns are of type character.
"cdesc_char"

#' An example of a GCT object with row and
#' column metadata and gene expression values
#' in the matrix.
"ds"

#' An example GCT object of knockdown experiments
#' targeting a subset of landmark genes.
"kd_gct"