Nothing
R/addGA.R
In chimera: A package for secondary analysis of fusion products
#insert DNAStringSet for fused trasncripts
setMethod("addGA","fSet",function(x, bam) {
sortBam(bam, paste(bam,"_sorted", sep=""))
indexBam(paste(bam,"_sorted.bam", sep=""))
ga <- readGAlignments(paste(bam,"_sorted.bam", sep=""))
tmp <- new("fSet", fusionInfo=x@fusionInfo, fusionLoc=x@fusionLoc, fusionRNA=x@fusionRNA, fusionGA=ga)
return(tmp)
})
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chimera documentation built on Nov. 8, 2020, 5:16 p.m.
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#insert DNAStringSet for fused trasncripts
setMethod("addGA","fSet",function(x, bam) {
sortBam(bam, paste(bam,"_sorted", sep=""))
indexBam(paste(bam,"_sorted.bam", sep=""))
ga <- readGAlignments(paste(bam,"_sorted.bam", sep=""))
tmp <- new("fSet", fusionInfo=x@fusionInfo, fusionLoc=x@fusionLoc, fusionRNA=x@fusionRNA, fusionGA=ga)
return(tmp)
})
Try the chimera package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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