inst/unitTests/test_constraints.R

In VanillaICE: A Hidden Markov Model for high throughput genotyping arrays

##test_bafconstraints <- function(){
##  ##isNonDecreasing <- VanillaICE:::isNonDecreasing
##  mus <- c(0, 1/4, 1/3, 1/2, 2/3, 3/4, 1)
##  names(mus) <- c("A", "AAAB", "AAB", "AB", "ABB", "ABBB", "B")
##  ##checkTrue(isNonDecreasing(mus))
##  makeMusBafNondecreasing <- VanillaICE:::makeMusBafNondecreasing
##  mus[["AAAB"]] <- 0.35
##  ##trace(makeMusBafNondecreasing, browser)
##  mus2 <- makeMusBafNondecreasing(mus)
##  checkIdentical(mus2[["AAAB"]], 1/3)
##  mus[["ABBB"]] <- 1/4
##  mus2 <- makeMusBafNondecreasing(mus)
##}