Files in TitanCNA
Subclonal copy number and LOH prediction from whole genome sequencing of tumours

README.md
.Rinstignore
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
src/titan.h
src/fwd_backC_clonalCN.c
src/viterbiC_clonalCN.c
src/getPositionOverlapC.c
src/register.c
data/datalist
data/EMresults.rda
R/correction.R R/haplotype.R R/utils.R R/hmmClonal.R R/plotting.R R/zzz.R R/paramEstimation.R
vignettes/TitanCNA.bib
vignettes/TitanCNA.Rnw
man/TitanCNA-output.Rd man/viterbiClonalCN.Rd man/computeSDbwIndex.Rd man/loadDefaultParameters.Rd man/correctCN.Rd man/TitanCNA-plotting.Rd man/TitanCNA-package.Rd man/correctReadDepth.Rd man/loadAlleleCounts.Rd man/getPositionOverlap.Rd man/haplotype.Rd man/runEMclonalCN.Rd man/wigImport.Rd man/filterData.Rd man/TitanCNA-dataset.Rd
inst/CITATION
inst/doc/TitanCNA.pdf
inst/doc/TitanCNA.Rnw
inst/doc/TitanCNA.R
inst/extdata/Seqinfo_hg19.rda
inst/extdata/test_alleleCounts_chr2.txt
inst/extdata/map_chr2.wig
inst/extdata/gc_chr2.wig
inst/extdata/test_tum_chr2.wig
inst/extdata/test_norm_chr2.wig
TitanCNA documentation built on Nov. 8, 2020, 8:14 p.m.