R/TarSeqQC-package.R

In TarSeqQC: TARgeted SEQuencing Experiment Quality Control

#' TarSeqQC: Targeted Sequencing Experiment Quality Control R package
#'
#' The package models targeted sequencing experiment output using previous 
#' packages. This package includes the new following features: 
#' \enumerate{
#'   \item Panel model:
#'    \itemize{
#'      \item  Model customizable feature panels.
#'      \item  Evaluation of the sequencing run performance at median or 
#'             coverage level for each feature.   
#'      \item  Exploration of sequenced features. 
#'    }
#'   \item Quality Control of the sequencing run:
#'    \itemize{
#'     \item General overview of the run performance.
#'     \item Statistical indicators at median or coverage level.
#'     \item Xlsx report.
#'   }
#'   \item Customizable scan bam file parameters.
#'   \item Customizable pileup build parameters.
#'   \item Incorporation of fasta sequence.
#'   \item Fast exploration of read profile for particular features or genomic
#'         regions, coloring SNPs occurences.
#' }
#'
#' @docType package
#' @name TarSeqQC-package
#'@author Gabriela A. Merino \email{gmerino@@bdmg.com.ar}, Cristobal Fresno
#'\email{cfresno@@bdmg.com.ar}, Yanina Murua \email{ymurua@leloir.org.ar},
#'Andrea S. Llera \email{allera@leloir.org.ar} and Elmer A. Fernandez 
#'\email{efernandez@bdmg.com.ar}
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