tests/testthat/test-visualize.R

In TCGAbiolinks: TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data

context("Visualize")

test_that("EAbarplot works", {
    Genelist <- c("FN1","COL1A1")
    ansEA <- TCGAanalyze_EAcomplete(TFname = "DEA genes Normal Vs Tumor",Genelist)
    TCGAvisualize_EAbarplot(
        tf = rownames(ansEA$ResBP),
        GOBPTab = ansEA$ResBP,
        GOCCTab = ansEA$ResCC,
        GOMFTab = ansEA$ResMF,
        PathTab = ansEA$ResPat,
        nRGTab = Genelist,
        nBar = 10,
        filename = "a.pdf")
    expect_true(file.exists("a.pdf"))
    unlink("a.pdf")
})