Files in StructuralVariantAnnotation
Variant annotations for structural variants
README.md
StructuralVariantAnnotation documentation built on Nov. 8, 2020, 5:43 p.m.
NEWS
NAMESPACE
DESCRIPTION
CODE_OF_CONDUCT.md
build/vignette.rds
R/BreakpointGRanges.R
R/util.R
R/StructuralVariantAnnotation.R
R/extensions-VCF.R
R/unittesthelper.R
R/vcfConstants.R
R/plotting.R
vignettes/vignettes.Rmd
man/align_breakpoints.Rd
man/breakpointgr2bedpe.Rd
man/isSymbolic.Rd
man/pairs2breakpointgr.Rd
man/partner.Rd
man/findInsDupOverlaps.Rd
man/breakendRanges.Rd
man/dot-isSymbolic.Rd
man/breakpointGRangesToVCF.Rd
man/dot-pairwiseLCPrefix.Rd
man/findBreakpointOverlaps.Rd
man/dot-toVcfBreakendNotationAlt.Rd
man/extractReferenceSequence.Rd
man/breakpointRanges.Rd
man/dot-testrecord.Rd
man/dot-testfile.Rd
man/calculateReferenceHomology.Rd
man/simpleEventLength.Rd
man/dot-unXStringSet.Rd
man/grapes-null-grapes.Rd
man/simpleEventType.Rd
man/countBreakpointOverlaps.Rd
man/dot-svLen.Rd
man/elementExtract.Rd
man/isStructural.Rd
man/dot-constrict.Rd
man/StructuralVariantAnnotation.Rd
man/extractBreakpointSequence.Rd
man/grapes-na-grapes.Rd
tests/testthat.R
tests/testthat/test-plotting.R
tests/testthat/test-BreakpointGRanges.R
tests/testthat/test-extensions-VCF.R
tests/testthat/test-util.R
inst/doc/vignettes.R
inst/doc/vignettes.html
inst/doc/vignettes.Rmd
inst/extdata/pindel-0.2.5b6.vcf
inst/extdata/COLO829T.purple.sv.ann.vcf.gz
inst/extdata/breakdancer-1.4.5.vcf
inst/extdata/unnamed.bedpe
inst/extdata/na12878_chr22_Sudmunt2015.vcf
inst/extdata/crest.vcf
inst/extdata/delly-0.6.8.vcf
inst/extdata/manta-0.29.6.vcf
inst/extdata/gridss-missingPartner.vcf
inst/extdata/gridss.bedpe
inst/extdata/gridss.vcf
inst/extdata/vcf4.2.example.sv.vcf
inst/extdata/breakend.vcf
inst/extdata/simple.vcf
inst/extdata/na12878_chr22_hydra.vcf
inst/extdata/na12878_chr22_crest.vcf
inst/extdata/manta-1.1.1.vcf
inst/extdata/multipleAltSVs.vcf
inst/extdata/gridss-na12878.vcf
inst/extdata/tigra-0.3.7.vcf
