SWATH2stats: Transform and Filter SWATH Data for Statistical Packages

This package is intended to transform SWATH data from the OpenSWATH software into a format readable by other statistics packages while performing filtering, annotation and FDR estimation.

README.md SWATH2stats example script SWATH2stats package Vignette SWATH2stats example script

Vignettes Man pages API and functions Files

Package details
Author	Peter Blattmann [aut, cre] Moritz Heusel [aut] Ruedi Aebersold [aut]
Bioconductor views	Annotation ExperimentalDesign ImmunoOncology MassSpectrometry Preprocessing Proteomics
Maintainer	Peter Blattmann <blattmann@imsb.biol.ethz.ch>
License	GPL-3
Version	1.20.1
URL	https://peterblattmann.github.io/SWATH2stats/
Package repository	View on Bioconductor
Installation	Install the latest version of this package by entering the following in R: `if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("SWATH2stats")`