R/import_packages.r

In SIAMCAT: Statistical Inference of Associations between Microbial Communities And host phenoTypes

#' @import     phyloseq mlr LiblineaR methods
#' @rawNamespace import(glmnet, except = 'auc')
#' @importFrom grDevices col2rgb colorRampPalette dev.off gray pdf rgb
#' @importFrom graphics abline arrows axis barplot box strheight strwidth
#'           boxplot grid image layout lines mtext hist points stripchart
#'           par plot plot.new polygon rect text title segments legend symbols
#' @importFrom stats coefficients cor median p.adjust rnorm qqplot
#'           predict quantile runif sd wilcox.test addmargins na.omit
#'           fisher.test binomial coef confint glm profile
#' @importFrom utils head read.table tail
#' @importFrom PRROC pr.curve
#' @importFrom pROC roc
#' @importFrom beanplot beanplot
#' @importFrom RColorBrewer brewer.pal brewer.pal.info
#' @importFrom ParamHelpers makeParamSet makeDiscreteParam makeNumericParam
#' @importFrom grid popViewport pushViewport plotViewport
#' @importFrom gridBase baseViewports
#' @importFrom gridExtra ttheme_minimal grid.table
#' @importFrom matrixStats rowQuantiles rowMaxs rowSds colRanks rowMedians
#'           rowVars
#' @importFrom scales alpha
#' @importFrom utils write.table read.csv askYesNo
#' @importFrom stringr str_extract_all str_split
#' @importFrom infotheo condentropy discretize
#' @importFrom corrplot corrplot colorlegend
#' @importFrom progress progress_bar

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