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Starting with a BAM file, this package provides the necessary functions for quality assessment, read start position recalibration, the counting of reads on CDS, 3'UTR, and 5'UTR, plotting of count data: pairs, log fold-change, codon frequency and coverage assessment, principal component analysis on codon coverage.
Package details |
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Author | Alexandra Popa |
Bioconductor views | Alignment Coverage PrincipalComponent QualityControl RiboSeq Sequencing Software |
Maintainer | A. Popa <alexandra.mariela.popa@gmail.com> |
License | GPL-3 |
Version | 1.20.0 |
Package repository | View on Bioconductor |
Installation |
Install the latest version of this package by entering the following in R:
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