msmsWorkspace-class: Workspace for 'msmsWorkflow' data
In RMassBank: Workflow to process tandem MS files and build MassBank records
Description
Usage
Arguments
Details
Author(s)
See Also
Description
A workspace which stores input and output data for msmsWorkflow.
Usage
1
2
## S4 method for signature 'msmsWorkspace'
show(object)
Arguments
object
The msmsWorkspace to display.
Details
Slots:
- files
The input file names
- spectra
The spectra per compound (RmbSpectraSet) extracted from the raw files
- aggregated
A data.frame with an aggregated peak table from all spectra.
Further columns are added during processing.
- rc, rc.ms1
The recalibration curves generated in workflow step 4.
- parent
For the workflow steps after 4: the parent workspace containing the state (spectra, aggregate)
before recalibration, such that the workflow can be reprocessed from start.
- archivename
The base name of the files the archive is stored to during the workflow.
- settings
The RMassBank settings used during the workflow, if stored with the workspace.
#'
Methods:
- show
Shows a brief summary of the object and processing progress.
Author(s)
Michael Stravs, Eawag <michael.stravs@eawag.ch>
See Also
RMassBank documentation built on Nov. 8, 2020, 6:06 p.m.
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Description Usage Arguments Details Author(s) See Also
Description
A workspace which stores input and output data for msmsWorkflow.
Usage
1 2 | ## S4 method for signature 'msmsWorkspace'
show(object)
|
Arguments
object |
The |
Details
Slots:
- files
The input file names
- spectra
The spectra per compound (
RmbSpectraSet) extracted from the raw files- aggregated
A data.frame with an aggregated peak table from all
spectra. Further columns are added during processing.- rc, rc.ms1
The recalibration curves generated in workflow step 4.
- parent
For the workflow steps after 4: the parent workspace containing the state (spectra, aggregate) before recalibration, such that the workflow can be reprocessed from start.
- archivename
The base name of the files the archive is stored to during the workflow.
- settings
The RMassBank settings used during the workflow, if stored with the workspace.
#'
Methods:
- show
Shows a brief summary of the object and processing progress.
Author(s)
Michael Stravs, Eawag <michael.stravs@eawag.ch>
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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