API for RGMQL
GenoMetric Query Language for R/Bioconductor
| Global functions | |
|---|---|
| .add_metadata | Source code |
| .aggregates | Source code |
| .check_cover_param | Source code |
| .check_input | Source code |
| .check_logical | Source code |
| .check_metadata_files | Source code |
| .check_metadata_list | Source code |
| .check_opt_value | Source code |
| .check_option | Source code |
| .check_parser | Source code |
| .condition | Source code |
| .counter | Source code |
| .download_or_upload | Source code |
| .exportGMQL | Source code |
| .exportGMQL.gdm | Source code |
| .exportGMQL.gtf | Source code |
| .extract_from_GRangesList | Source code |
| .extract_from_dataset | Source code |
| .get_suffix | Source code |
| .importGMQL.gdm | Source code |
| .importGMQL.gtf | Source code |
| .is_login_expired | Source code |
| .join_condition | Source code |
| .metadata_from_frame_to_list | Source code |
| .onAttach | Source code |
| .onDetach | Source code |
| .onLoad | Source code |
| .onUnload | Source code |
| .ordering_meta | Source code |
| .parse_Granges | Source code |
| .parse_gdm_files | Source code |
| .parse_gtf_files | Source code |
| .schema_header | Source code |
| .schema_type_coordinate | Source code |
| .trasform | Source code |
| .trasform_cover | Source code |
| .trasform_update | Source code |
| .write_metadata | Source code |
| .write_schema | Source code |
| AGGREGATES | Source code |
| AGGREGATES-Object | Man page |
| ALL | Man page Source code |
| ANY | Man page Source code |
| ASC | Man page Source code |
| AVG | Man page Source code |
| BAG | Man page Source code |
| BAGD | Man page Source code |
| COUNT | Man page Source code |
| COUNTSAMP | Man page Source code |
| Cover-Param | Man page |
| DESC | Man page Source code |
| DG | Man page Source code |
| DGE | Man page Source code |
| DISTAL | Source code |
| DISTAL-Object | Man page |
| DL | Man page Source code |
| DLE | Man page Source code |
| DOWN | Man page Source code |
| Evaluation-Function | Man page |
| GMQLDataset | Source code |
| MAX | Man page Source code |
| MD | Man page Source code |
| MEDIAN | Man page Source code |
| META | Man page Source code |
| META_AGGREGATES | Source code |
| MIN | Man page Source code |
| NIL | Man page Source code |
| OPERATOR | Source code |
| OPERATOR-Object | Man page |
| Ordering-Functions | Man page |
| PARAMETER | Source code |
| Q1 | Man page Source code |
| Q2 | Man page Source code |
| Q3 | Man page Source code |
| SQRT | Man page Source code |
| STD | Man page Source code |
| SUM | Man page Source code |
| UP | Man page Source code |
| aggregate | Man page |
| aggregate,GMQLDataset-method | Man page |
| arrange | Man page |
| arrange,GMQLDataset-method | Man page |
| arrange.GMQLDataset | Source code |
| as.character.COUNT | Source code |
| as.character.COUNTSAMP | Source code |
| as.character.DISTAL | Source code |
| as.character.DOWN | Source code |
| as.character.META | Source code |
| as.character.META_AGGREGATES | Source code |
| as.character.OPERATOR | Source code |
| as.character.PARAMETER | Source code |
| as.character.UP | Source code |
| check.COUNT | Source code |
| check.COUNTSAMP | Source code |
| check.DISTAL | Source code |
| check.META | Source code |
| check.META_AGGREGATES | Source code |
| check.NIL | Source code |
| check.OPERATOR | Source code |
| collect | Man page |
| collect,GMQLDataset-method | Man page |
| collect.GMQLDataset | Source code |
| compile_query | Man page Source code |
| compile_query_fromfile | Man page Source code |
| condition_evaluation | Man page |
| conds | Man page Source code |
| cover | Man page |
| cover,GMQLDataset-method | Man page |
| delete_dataset | Man page Source code |
| download_as_GRangesList | Man page Source code |
| download_dataset | Man page Source code |
| execute | Man page Source code |
| export_gmql | Man page Source code |
| extend | Man page |
| extend,GMQLDataset-method | Man page |
| extend-method | Man page |
| filter | Man page |
| filter,GMQLDataset-method | Man page |
| filter.GMQLDateset | Source code |
| filter_and_extract | Man page Source code |
| gmql_cover | Source code |
| gmql_difference | Source code |
| gmql_extend | Source code |
| gmql_group | Source code |
| gmql_join | Source code |
| gmql_map | Source code |
| gmql_materialize | Source code |
| gmql_merge | Source code |
| gmql_order | Source code |
| gmql_project | Source code |
| gmql_select | Source code |
| gmql_take | Source code |
| gmql_union | Source code |
| group_by | Man page |
| group_by,GMQLDataset-method | Man page |
| group_by.GMQLDateset | Source code |
| import_gmql | Man page Source code |
| initGMQLscalaAPI | Source code |
| init_gmql | Man page Source code |
| log_job | Man page |
| login_gmql | Man page Source code |
| logout_gmql | Man page Source code |
| map | Man page |
| map,GMQLDataset-method | Man page |
| map-method | Man page |
| merge | Man page |
| merge,GMQLDataset,GMQLDataset-method | Man page |
| print.DISTAL | Source code |
| print.META | Source code |
| print.META_AGGREGATES | Source code |
| print.OPERATOR | Source code |
| print.PARAMETER | Source code |
| read_GRangesList | Man page Source code |
| read_gmql | Man page Source code |
| register_gmql | Man page Source code |
| remote_processing | Man page Source code |
| run_query | Man page Source code |
| run_query_fromfile | Man page Source code |
| sample_metadata | Man page Source code |
| sample_region | Man page Source code |
| save_query | Man page Source code |
| save_query_fromfile | Man page Source code |
| select | Man page |
| select,GMQLDataset-method | Man page |
| select.GMQLDataset | Source code |
| semijoin | Man page Source code |
| serialize_query | Source code |
| setdiff | Man page |
| setdiff,GMQLDataset,GMQLDataset-method | Man page |
| show_datasets_list | Man page Source code |
| show_job_log | Man page Source code |
| show_jobs_list | Man page Source code |
| show_queries_list | Man page Source code |
| show_samples_list | Man page Source code |
| show_schema | Man page Source code |
| stop_gmql | Man page Source code |
| stop_job | Man page Source code |
| take | Man page |
| take,GMQLDataset-method | Man page |
| take-method | Man page |
| take_value.META_AGGREGATES | Source code |
| trace_job | Man page Source code |
| union | Man page |
| union,GMQLDataset,GMQLDataset-method | Man page |
| upload_dataset | Man page Source code |
