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A package for RNA basepair analysis, including the visualization of basepairs as arc diagrams for easy comparison and annotation of sequence and structure. Arc diagrams can additionally be projected onto multiple sequence alignments to assess basepair conservation and covariation, with numerical methods for computing statistics for each.
Package details |
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Author | Daniel Lai, Irmtraud Meyer <irmtraud.meyer@cantab.net> |
Bioconductor views | Alignment DataImport DataRepresentation MultipleComparison MultipleSequenceAlignment Preprocessing Visualization |
Maintainer | Daniel Lai <jujubix@cs.ubc.ca> |
License | GPL-3 |
Version | 1.18.0 |
URL | http://www.e-rna.org/r-chie/ |
Package repository | View on Bioconductor |
Installation |
Install the latest version of this package by entering the following in R:
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