Files in QuasR
Quantify and Annotate Short Reads in R

README.md

NAMESPACE

DESCRIPTION

build/vignette.rds

src/bam.c

src/count_alignments.h

src/convert_reads_id_bis_rc.h

src/profile_alignments.c

src/quantify_methylation.cpp

src/utilities.c

src/split_sam_chr.c

src/convert_reads_id_bis_rc.c

src/nucleotide_alignment_frequencies.h

src/merge_reorder_sam.h

src/cat_bam.h

src/split_sam_chr.h

src/remove_unmapped_from_sam.h

src/count_junctions.h

src/count_alignments_subregions.c

src/bam_cat.c

src/merge_reorder_sam.cpp

src/quantify_methylation.h

src/utilities.h

src/idxstats_bam.h

src/count_alignments_subregions.h

src/count_junctions.cpp

src/profile_alignments.h

src/extract_unmapped_reads.c

src/cat_bam.c

src/nucleotide_alignment_frequencies.c

src/bam_plbuf.c

src/remove_unmapped_from_sam.c

src/Makevars

src/filter_hisat2.c

src/sam.c

src/export_wig.h

src/extract_unmapped_reads.h

src/idxstats_bam.c

src/filter_hisat2.h

src/export_wig.c

src/sam_utils.c

src/R_init_QuasR.cpp

src/count_alignments.c

R/qProject-class.R R/qProfile.R R/qAlign.R R/createAlignments-functions.R R/createIndex-functions.R R/utilities.R R/qQCReport.R R/qMeth.R R/qCount.R R/qExportWig.R R/preprocessReads.R vignettes/QuasR-logo.pdf

vignettes/QuasR-logo.png

vignettes/QuasR-scheme.png

vignettes/QuasR.Rmd

vignettes/QuasR-refs.bib

inst/NEWS

inst/CITATION

inst/doc/QuasR.html

inst/doc/QuasR.R inst/doc/QuasR.Rmd

inst/extdata/bis_1_1.fa.bz2

inst/extdata/phiX_paired_withSecondary.bam

inst/extdata/samples_rna_paired.txt

inst/extdata/samples_chip_single.txt

inst/extdata/auxiliaries.txt

inst/extdata/samples_rna_single.txt

inst/extdata/NC_001422.1.fa

inst/extdata/samples_mirna.txt

inst/extdata/phiX_paired_withSecondary_sampleFile.txt

inst/extdata/rna_2_2.fq.bz2

inst/extdata/BSgenome.HSapiens.QuasR.hg19sub_0.1.0.tar.gz

inst/extdata/hg19sub_snp.txt

inst/extdata/rna_2_1.fq.bz2

inst/extdata/chip_2_1.fq.bz2

inst/extdata/phiX_paired_withSecondary.bam.bai

inst/extdata/mirbaseXX_qsr.gff3

inst/extdata/hg19sub.fa

inst/extdata/hg19sub_annotation.gtf

inst/extdata/mirna_1.fa

inst/extdata/samples_bis_single.txt

inst/extdata/rna_1_1.fq.bz2

inst/extdata/rna_1_2.fq.bz2

inst/extdata/chip_1_1.fq.bz2

inst/AlignerIndexPkg-template/NAMESPACE

inst/AlignerIndexPkg-template/DESCRIPTION

inst/AlignerIndexPkg-template/man/package.Rd

inst/AlignerIndexPkg-template/inst/dummy.txt

QuasR documentation built on Nov. 8, 2020, 8:31 p.m.

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QuasR
Quantify and Annotate Short Reads in R

Files in QuasR
Quantify and Annotate Short Reads in R

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QuasR Quantify and Annotate Short Reads in R

Files in QuasR Quantify and Annotate Short Reads in R

R Package Documentation

Browse R Packages

We want your feedback!

QuasR
Quantify and Annotate Short Reads in R

Files in QuasR
Quantify and Annotate Short Reads in R