Files in PloGO2

Plot Gene Ontology and KEGG pathway Annotation and Abundance

README.md R/genWegoFile.R R/GOGraphWrapper.R R/processAnnotations.R R/countAndAbundance.R R/GOParent.R R/Children.R R/processGoFile.R R/printSummary.R R/GOTermList.R R/processAnnotFile.R R/aggregateAbundance.R R/annotationPlot.R R/getGoID.R R/tabulateAnnot.R R/printOpenxlsxStyle.R R/writeGOannot.R R/printSimpleOpenxlsxStyle.R R/genAnnotationFiles.R R/getUniprotBatch.R R/extractPairs.R R/plotAbundance.R R/processPathFile.R R/read.annot.file.R R/processPlainAnnotation.R R/plotAbundanceBar.R R/compareAnnot.R R/ExcelToPloPathway.R R/abundancePlot.R R/PloGO.R R/plotMat.R R/inferGroup.R R/PloPathway.R R/ExcelToPloGO.R R/writeAnnotation.R R/inGraph.R vignettes/Annotation1Perc.pdf man/genWegoFile.Rd man/PloPathway.Rd man/annotationPlot.Rd man/compareAnnot.Rd man/processAnnotation.Rd man/PloGO.Rd man/processGoFile.Rd man/genAnnotationFiles.Rd man/ExcelToPloPathway.Rd man/writeAnnotation.Rd man/read.annot.file.Rd man/processPathFile.Rd man/GOTermList.Rd man/ExcelToPloGO.Rd man/plotAbundanceBar.Rd man/getGoID.Rd man/abundancePlot.Rd man/printSummary.Rd inst/doc/PloGO2_vignette.R inst/doc/PloGO2_with_WGNCA_vignette.pdf inst/doc/PloGO2_with_WGNCA_vignette.R inst/doc/PloGO2_vignette.pdf inst/script/plogo2_script.R inst/script/WGCNA_proteomics.R