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Linnorm is an algorithm for normalizing and transforming RNA-seq, single cell RNA-seq, ChIP-seq count data or any large scale count data. It has been independently reviewed by Tian et al. on Nature Methods (https://doi.org/10.1038/s41592-019-0425-8). Linnorm can work with raw count, CPM, RPKM, FPKM and TPM.
Package details |
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Author | Shun Hang Yip <shunyip@bu.edu>, Panwen Wang <pwwang@pwwang.com>, Jean-Pierre Kocher <Kocher.JeanPierre@mayo.edu>, Pak Chung Sham <pcsham@hku.hk>, Junwen Wang <junwen@uw.edu> |
Bioconductor views | BatchEffect ChIPSeq Clustering DifferentialExpression GeneExpression Genetics ImmunoOncology Network Normalization PeakDetection RNASeq Sequencing SingleCell Software Transcription |
Maintainer | Ken Shun Hang Yip <shunyip@bu.edu> |
License | MIT + file LICENSE |
Version | 2.14.0 |
URL | https://doi.org/10.1093/nar/gkx828 |
Package repository | View on Bioconductor |
Installation |
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