inst/doc/GOpro_vignette.R

In GOpro: Find the most characteristic gene ontology terms for groups of human genes

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BiocStyle::markdown()

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#  if (!requireNamespace("BiocManager", quietly=TRUE))
#      install.packages("BiocManager")
#  BiocManager::install("GOpro", dependencies = TRUE)

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library(GOpro)

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exrtcga

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findGO(exrtcga)

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findGO(exrtcga, extend = TRUE)

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findGO(exrtcga, topGO = 2, grouped = 'clustering')

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findGO(exrtcga, topGO = 2, grouped = 'clustering', over.rep = TRUE)