NEWS.md

In DOSE: Disease Ontology Semantic and Enrichment analysis

DOSE 3.15.4

• update setReadable and geneInCategory methods for compareClusterResult object (2020-10-12, Mon)

DOSE 3.15.3

• allow passing additional parameters to fgsea (2020-10-09, Fri)
• https://github.com/YuLab-SMU/DOSE/pull/40
• add termsim and method slots to compareClusterResult, enrichRestul and gseaResult
• https://github.com/YuLab-SMU/DOSE/pull/39

DOSE 3.15.2

• update NCG and DGN data (2020-10-09, Thu)

DOSE 3.14.0

• Bioconductor 3.11 release

DOSE 3.13.2

• fixed issue caused by R v4.0.0 (2020-03-12, Thu)
• length > 1 in coercion to logical
• https://github.com/YuLab-SMU/DOSE/pull/32

DOSE 3.13.1

• remove S4Vectors dependencies (2019-12-19, Thu)
• extend setReadable to support compareClusterResult (2019-12-02, Mon)
• add gene2Symbol, keytype and readable slots for compareClusterResult
• move compareClusterResult class definition from clusterProfiler (2019-11-01, Fri)

DOSE 3.12.0

• Bioconductor 3.10 release

DOSE 3.11.2

• ignore universe and print a message if users passing accidentally passing wrong input (2019-10-24, Thu)
• https://github.com/YuLab-SMU/clusterProfiler/issues/217
• gene with minimal ES value (NES < 0) will be reported in core_enrichment (2019-07-31, Wed)

DOSE 3.11.1

• build_Anno now compatible with tibble (2019-05-28, Tue)

DOSE 3.10.0

• Bioconductor 3.9 release

DOSE 3.9.4

• export parse_ratio (2019-03-29, Tue)

DOSE 3.9.4

• bug fixed of get_enriched (2019-01-14, Mon)
• https://github.com/GuangchuangYu/clusterProfiler/issues/177

DOSE 3.9.2

• mv enrichment vignettes to clusterProfiler-book (2019-01-10, Thu)

DOSE 3.9.1

• asis parameter in [.enrichResult and [.gseaResult (2018-12-24, Mon)
• https://github.com/GuangchuangYu/enrichplot/issues/17

DOSE 3.8

• Bioconductor 3.8 release

DOSE 3.7.1

• S3 accessor methods only return enriched terms. (2018-06-20, Wed)

DOSE documentation built on Nov. 8, 2020, 7:48 p.m.