R/data.R

In DEComplexDisease: A tool for differential expression analysis and DEGs based investigation to complex diseases by bi-clustering analysis

#' expression matrix of breast cancer (part)
#'
#' A matrix of breast cancer patients from TCGA (only part)
#'
#' @docType data
#' @keywords datasets
#' @name exp
#' @format a matrix
#' @return A matrix
NULL

#' DEG matrix of breast cancer (part)
#'
#' A matrix of bianry DEG matrix for breast cancer patients (only part)
#'
#' @docType data
#' @keywords datasets
#' @name deg
#' @format a matrix
#' @return A matrix
NULL

#' Binary patient annotation (part)
#'
#' A binary vectory for disease status (only part)
#'
#' @docType data
#' @keywords datasets
#' @name cl
#' @format a vector
#' @return A vector
NULL

#' seed-based module analysis (part)
#'
#' The seed-based module analysis results (only part)
#'
#' @docType data
#' @keywords datasets
#' @name seed.mod
#' @format a list
#' @return A list
NULL

#' clustered module 1
#'
#' The module analysis results
#'
#' @docType data
#' @keywords datasets
#' @name res.mod1
#' @format a list
#' @return A list
NULL

#' clustered module 1
#'
#' The module analysis results
#'
#' @docType data
#' @keywords datasets
#' @name res.mod2
#' @format a list
#' @return A list
NULL

#' The patient-specific DEGs (part)
#'
#' The patient-specific DEGs (only part)
#'
#' @docType data
#' @keywords datasets
#' @name deg.spc
#' @format a list
#' @return A list
NULL

#' seed-based module analysis (part)
#'
#' The clustered module analysis results (only part)
#'
#' @docType data
#' @keywords datasets
#' @name cluster.mod
#' @format a list
#' @return A list
NULL

#' ER status annotation
#'
#' ER status annotation
#'
#' @docType data
#' @keywords datasets
#' @name ann.er
#' @format a data.frame
#' @return a data.frame
NULL