CytoTree: A Toolkit for Flow And Mass Cytometry Data

A trajectory inference toolkit for flow and mass cytometry data. CytoTree is a valuable tool to build a tree-shaped trajectory using flow and mass cytometry data. The application of CytoTree ranges from clustering and dimensionality reduction to trajectory reconstruction and pseudotime estimation. It offers complete analyzing workflow for flow and mass cytometry data.

Package overview README.md Quick start of CytoTree

Vignettes Man pages API and functions Files

Package details
Author	Yuting Dai [aut, cre]
Bioconductor views	CellBasedAssays CellBiology Clustering FlowCytometry Network NetworkInference Software Visualization
Maintainer	Yuting Dai <forlynna@sjtu.edu.cn>
License	GPL-3
Version	1.0.3
URL	http://www.r-project.org https://github.com/JhuangLab/CytoTree
Package repository	View on Bioconductor
Installation	Install the latest version of this package by entering the following in R: `if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("CytoTree")`