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inst/extdata/GentlemanLab/BSgenome.Mdomestica.UCSC.monDom5-tools/sort_monDom5.2bit.R
In BSgenome: Software infrastructure for efficient representation of full genomes and their SNPs
library(Biostrings)
library(rtracklayer)
monDom5 <- import("monDom5.2bit")
monDom5_seqlevels <- paste0("chr", c(1:8, "X", "M", "Un"))
stopifnot(setequal(names(monDom5), monDom5_seqlevels))
export(monDom5[monDom5_seqlevels], "monDom5.sorted.2bit")
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BSgenome documentation built on Nov. 8, 2020, 7:48 p.m.
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library(Biostrings)
library(rtracklayer)
monDom5 <- import("monDom5.2bit")
monDom5_seqlevels <- paste0("chr", c(1:8, "X", "M", "Un"))
stopifnot(setequal(names(monDom5), monDom5_seqlevels))
export(monDom5[monDom5_seqlevels], "monDom5.sorted.2bit")
Try the BSgenome package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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