tests/testthat/test_calcPositions.R

In BEclear: Correction of batch effects in DNA methylation data

testthat::context("Calculation of block positions")

testthat::test_that("Values that add up", {
  testthat::expect_equal(unname(calcPositions(100, 10)), c(10, 81, 91, 90, 100))
  testthat::expect_equal(unname(calcPositions(27, 3)), c(9, 22, 25, 24, 27))
  testthat::expect_equal(unname(calcPositions(16, 4)), c(4, 9, 13, 12, 16))
})


testthat::test_that("Values that don't add up", {
  testthat::expect_equal(unname(calcPositions(99, 10)), c(10, 81, 91, 90, 99))
  testthat::expect_equal(unname(calcPositions(200, 13)), c(15, 170, 183, 182, 200))
  testthat::expect_equal(unname(calcPositions(1363, 13)), c(105, 1340, 1353, 1352, 1363))
})

testthat::test_that("Block size smaller than 1", {
  testthat::expect_error(calcPositions(5, -1))
  testthat::expect_error(calcPositions(33, 0))
  testthat::expect_error(calcPositions(1, -3))
})

testthat::test_that("Number of entries smaller than 1", {
  testthat::expect_error(calcPositions(0, 1))
  testthat::expect_error(calcPositions(0, 0))
  testthat::expect_error(calcPositions(-1, -3))
  testthat::expect_error(calcPositions(-20, 67))
})

testthat::test_that("Number smallerthan block size", {
  testthat::expect_equal(unname(calcPositions(13, 55)), c(1, 0, 1, 0, 13))
})