Files in ArrayExpressHTS
ArrayExpress High Throughput Sequencing Processing Pipeline
NAMESPACE
DESCRIPTION
build/vignette.rds
src/hashtable_utility.c
src/hashtable_itr.c
src/functions.c
src/hashtable_utility.h
src/hashtable_itr.h
src/addXS.c
src/fltbam.c
src/bam_plbuf.c
src/Makevars
src/sam.c
src/hashtable.h
src/hashtable_private.h
src/hashtable.c
R/varutil.R
R/ae2enamap.R
R/reference.R
R/optutil.R
R/pipeline.R
R/utils.R
R/comparedAnalysis.R
R/vars.R
R/onload.R
R/tweaked.R
R/singlePlots.R
R/defaults.R
R/proputil.R
R/traceutil.R
R/options.R
R/psrutil.R
R/logutil.R
R/cluster.R
R/package.R
R/project_options.R
R/functions.R
R/comparedPlots.R
R/memutil.R
R/trace.R
vignettes/ArrayExpressHTS.Rnw
man/isRCloud.Rd
man/ArrayExpressHTS.Rd
man/prepareReference.Rd
man/processing-options.Rd
man/ArrayExpressHTSFastQ.Rd
man/prepareAnnotation.Rd
man/package-options.Rd
inst/NEWS
inst/doc/ArrayExpressHTS.Rnw
inst/doc/ArrayExpressHTS.pdf
inst/doc/ArrayExpressHTS.R
inst/script/gtf2txt.pl
inst/expdata/testExperiment/data/SRR017245.fastq
inst/expdata/testExperiment/data/SRR017242.fastq
inst/expdata/testExperiment/data/SRR017236.fastq
inst/expdata/testExperiment/data/testExperiment.idf.txt
inst/expdata/testExperiment/data/SRR017246.fastq
inst/expdata/testExperiment/data/SRR017247.fastq
inst/expdata/testExperiment/data/SRR017234.fastq
inst/expdata/testExperiment/data/SRR017237.fastq
inst/expdata/testExperiment/data/SRR017238.fastq
inst/expdata/testExperiment/data/SRR017241.fastq
inst/expdata/testExperiment/data/SRR017239.fastq
inst/expdata/testExperiment/data/testExperiment.sdrf.txt
inst/expdata/testExperiment/data/SRR017248.fastq
inst/expdata/testExperiment/data/SRR017233.fastq
inst/expdata/testExperiment/data/SRR017244.fastq
inst/expdata/testExperiment/data/SRR017243.fastq
inst/expdata/testExperiment/data/SRR017240.fastq
inst/expdata/testExperiment/data/SRR017235.fastq
