Files in AnnotationForge

Tools for building SQLite-based annotation data packages

README.md R/makeOrgPackageFromNCBI.R R/sqlForge_schemaGen.R R/sqlForge_wrapBaseDBPkgs.R R/test_AnnotationForge_package.R R/makeOrgPackage.R R/sqlForge_tableBuilder.R R/sqlForge_utils.R R/NCBI_getters.R R/makeProbePackage.R R/sqlForge_makeAnnPkgs.R R/sqlForge_baseMapBuilder.R R/sqlForge_seqnames.R R/makeChipPackageFromDataFrames.R R/makeInparanoidDbs.R R/makeAnnDbPkg.R vignettes/MakingNewOrganismPackages.Rmd vignettes/Homo_sapiens.pdf man/AnnDbPkg-maker.Rd man/generateSeqnames_db.Rd man/makeProbePackage.Rd man/makeOrgPackageFromNCBI.Rd man/makeOrgPackage.Rd man/sqlForge-wrapDBPackages.Rd man/sqlForge-makeCHIPDB.Rd man/sqlForge-popDB.Rd man/getProbeData_1lq.Rd man/makeChipPackageFromDataFrames.Rd man/makeInpDb.Rd man/getProbeDataAffy.Rd man/available.db0pkgs.Rd tests/AnnotationForge_unit_tests.R inst/doc/MakingNewAnnotationPackages.R inst/doc/makeProbePackage.pdf inst/doc/MakingNewOrganismPackages.Rmd inst/doc/SQLForge.pdf inst/doc/makeProbePackage.R inst/doc/MakingNewOrganismPackages.R inst/doc/MakingNewAnnotationPackages.pdf inst/doc/SQLForge.R inst/AnnDbPkg-templates/NCBICHIP.DB/R/zzz.R inst/AnnDbPkg-templates/NCBICHIP.DB/tests/runalltests.R inst/AnnDbPkg-templates/NCBICHIP.DB/tests/unit/test.R inst/AnnDbPkg-templates/ORGANISM.DB/R/zzz.R inst/AnnDbPkg-templates/ORGANISM.DB/tests/runalltests.R inst/AnnDbPkg-templates/ORGANISM.DB/tests/unit/test.R inst/AnnDbPkg-templates/YEASTCHIP.DB/R/zzz.R inst/AnnDbPkg-templates/YEASTCHIP.DB/tests/runalltests.R inst/AnnDbPkg-templates/YEASTCHIP.DB/tests/unit/test.R inst/AnnDbPkg-templates/NCBIORG.DB/R/zzz.R inst/AnnDbPkg-templates/NCBIORG.DB/tests/runalltests.R inst/AnnDbPkg-templates/NCBIORG.DB/tests/unit/test.R inst/AnnDbPkg-templates/YEAST.DB/R/zzz.R inst/AnnDbPkg-templates/YEAST.DB/tests/runalltests.R inst/AnnDbPkg-templates/YEAST.DB/tests/unit/test.R inst/AnnDbPkg-templates/INPARANOID.DB/R/zzz.R inst/AnnDbPkg-templates/KEGG.DB/R/zzz.R inst/AnnDbPkg-templates/ARABIDOPSIS.DB/R/zzz.R inst/AnnDbPkg-templates/ARABIDOPSIS.DB/tests/runalltests.R inst/AnnDbPkg-templates/ARABIDOPSIS.DB/tests/unit/test.R inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/R/zzz.R inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/tests/runalltests.R inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/tests/unit/test.R inst/AnnDbPkg-templates/NOSCHEMA.DB/R/zzz.R inst/AnnDbPkg-templates/PFAM.DB/R/zzz.R inst/AnnDbPkg-templates/COELICOLOR.DB/R/zzz.R inst/AnnDbPkg-templates/COELICOLOR.DB/tests/runalltests.R inst/AnnDbPkg-templates/COELICOLOR.DB/tests/unit/test.R inst/AnnDbPkg-templates/MALARIA.DB/R/zzz.R inst/AnnDbPkg-templates/MALARIA.DB/tests/runalltests.R inst/AnnDbPkg-templates/MALARIA.DB/tests/unit/test.R inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/R/zzz.R inst/AnnDbPkg-templates/YEASTNCBI.DB/R/zzz.R inst/AnnDbPkg-templates/YEASTNCBI.DB/tests/runalltests.R inst/AnnDbPkg-templates/YEASTNCBI.DB/tests/unit/test.R inst/AnnDbPkg-templates/GO.DB/R/zzz.R inst/extdata/GentlemanLab/org-batch-script.R inst/extdata/GentlemanLab/chip-batch-script.R inst/extdata/GentlemanLab/generateSchemas.R inst/script/fasterOrgRecipe.R inst/script/viableIDs.R inst/script/makeNoSchemaDb.R inst/script/makeNoSchemaChipDb.R inst/ProbePkg-template/R/zzz.R inst/unitTests/test_makeOrgPackage.R