Files in ALPS
AnaLysis routines for ePigenomicS data
.BBSoptions
README.md
NEWS
NAMESPACE
DESCRIPTION
LICENSE
build/vignette.rds
R/plot_enrichments.R
R/plot_correlation.R
R/plot_browser_tracks.R
R/ALPS-package.r
R/get_genomic_annotations.R
R/global_vars.R
R/get_variable_regions.R
R/utils-pipe.R
R/plot_motif_logo.R
R/multiBigwig_summary.R
R/plot_genomic_annotations.R
vignettes/README-ALPS-overview.png
vignettes/README-bigwig-overview.png
vignettes/ALPS-ref.bib
vignettes/ALPS-vignette.Rmd
man/plot_genomic_annotations.Rd
man/get_genomic_annotations.Rd
man/ALPS-package.Rd
man/pipe.Rd
man/multiBigwig_summary.Rd
man/merge_GR.Rd
man/process_transfac.Rd
man/plot_correlation.Rd
man/process_jaspar.Rd
man/plot_motif_logo.Rd
man/plot_enrichments.Rd
man/process_homer.Rd
man/plot_browser_tracks.Rd
man/get_variable_regions.Rd
man/process_pfm.Rd
man/process_meme.Rd
tests/testthat.R
tests/testthat/test-get_genomic_annotations.R
tests/testthat/test-get_variable_regions.R
tests/testthat/test-multiBigwig_summary.R
inst/doc/ALPS-vignette.R
inst/doc/ALPS-vignette.html
inst/doc/ALPS-vignette.Rmd
inst/extdata/bw/GBMx_1.bed
inst/extdata/bw/ACCx_025FE5F8_T1.bw
inst/extdata/bw/ACCx_1.bed
inst/extdata/bw/LGGx_116B070A_T1.bw
inst/extdata/bw/GBMx_2.bed
inst/extdata/bw/ALPS_example_datatable.txt
inst/extdata/bw/ACCx_025FE5F8_T2.bw
inst/extdata/bw/GBMx_09C0DCE7_T1.bw
inst/extdata/bw/BRCA_1.bed
inst/extdata/bw/BRCA_01112370_T1.bw
inst/extdata/bw/BRCA_2.bed
inst/extdata/bw/ACCx_2.bed
inst/extdata/bw/LGGx_116B070A_T2.bw
inst/extdata/bw/LGGx_2.bed
inst/extdata/bw/LGGx_1.bed
inst/extdata/bw/GBMx_09C0DCE7_T2.bw
inst/extdata/bw/BRCA_000CFD9F_T2.bw
inst/extdata/overlap_violins/enrichemnts_4_overlapviolins.txt
inst/extdata/overlap_violins/data_table_4_overlapviolins.txt
inst/extdata/motifs/MA0147.2.pfm
inst/extdata/motifs/MA0147.2.meme
inst/extdata/motifs/MA0147.2.jaspar
inst/extdata/motifs/MA0147.2.transfac
inst/extdata/motifs/cmyc.homer
inst/script/DATASET.R
inst/figures/README-ALPS-overview.png
